Publications

Selected Peer-reviewed Publications

#, corresponding author; 'Feng He' sometimes written as 'Feng Q. He' or 'Feng Q. Hefeng' (to be distinguishable, family name and given name put together in the last version);the online content from the NCBI or directly from the journal is available following the link underlying 'Access'.

Christophe M. Capelle, Séverine Ciré, Wim Ammerlaan, Maria Konstantinou, Rudi Balling, Fay Betsou, Antonio Cosma, Markus Ollert and Feng Q. Hefeng, Standard Peripheral Blood Mononuclear Cell Cryopreservation Selectively Decreases Detection of Nine Clinically Relevant T Cell Markers, ImmunoHorizons, 2021, August 1, 5 (8) 711-720.
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Jaouad Bouayed, Feng Q. Hefeng, Mahesh S. Desai, Bin Zhou, Tsuriel Rashi, Rachid Soulimani, Torsten Bohn, Anti-pandemic lessons and altruistic behavior from major world religions at the time of COVID-19.
Brain, Behavior, and Immunity, 2021 May 1, In press
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Christophe M. Capelle, Ni Zeng, Egle Danileviciute, Sabrina Freitas Rodrigues, Markus Ollert, Rudi Balling, Feng Q. He#Identification of VIMP as a gene inhibiting cytokine production in human CD4+ effector T cells.
Cell Press iScience, 2021 Mar 9, 102289
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Korneliusz Golebski , Janice A Layhadi , Umit Sahiner , Esther H Steveling-Klein , Madison M Lenormand , Rachael C Y Li , Suzanne M Bal , Balthasar A Heesters , Gemma Vilà-Nadal , Oliver Hunewald , Guillem Montamat , Feng Q He , Markus Ollert , Oleksandra Fedina , Mongkol Lao-Araya , Susanne J H Vijverberg , Anke-Hilse Maitland-van der Zee , Cornelis M van Drunen , Wytske J Fokkens , Stephen R Durham , Hergen Spits , Mohamed H Shamji, Induction of IL-10-producing type 2 innate lymphoid cells by allergen immunotherapy is associated with clinical response.
Immunity, 2021 Feb 9, 54(2):291-307.e7.
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Massimiliano Zanin, Bruno F R Santos, Paul M A Antony, Clara Berenguer-Escuder, Simone B Larsen, Zoé Hanss, Peter A Barbuti, Aidos S Baumuratov, Dajana Grossmann, Christophe M Capelle, Joseph Weber, Rudi Balling, Markus Ollert, Rejko Krüger, Nico J Diederich, Feng Q He#, Mitochondria interaction networks show altered topological patterns in Parkinson's disease.
Npj Systems Biology and Applications, 2020 Nov 10, 6(1):38.
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Blandine Comte, Jan Baumbach, Arriel Benis, José Basílio, Nataša Debeljak, Åsmund Flobak, Christian Franken, Nissim Harel, Feng He, Martin Kuiper, Juan Albino Méndez Pérez, Estelle Pujos-Guillot, Tadeja Režen, Damjana Rozman, Johannes A Schmid, Jeanesse Scerri, Paolo Tieri, Kristel Van Steen, Sona Vasudevan, Steven Watterson, Harald H H W Schmidt, Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine.
Network and Systems Medicine, 2020 Jul 6, 3(1):67-90.
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I-Na Lu, Claude P Muller,  Feng Q He#, Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies.
Virus Research, 2020, Jul 2, 283:197963. 
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Sylvie Delhalle, Sebastian Bode, Rudi Balling, Markus Ollert, Feng He#A Roadmap towards Personalized Immunology.
Npj Systems Biology and Applications, 2018, 4:9. 
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Alexander Mazein, Marek Ostaszewski, Inna Kuperstein, Steven Watterson, Nicolas Le Novère, Diane Lefaudeux, Bertrand De Meulder, Johann Pellet, Irina Balaur, Mansoor Saqi, Maria Manuela Nogueira, Feng He, Andrew Parton, Nathanaël Lemonnier, Piotr Gawron, Stephan Gebel, Pierre Hainaut, Markus Ollert, Ugur Dogrusoz, Emmanuel Barillot, Andrei Zinovyev, Reinhard Schneider, Rudi Balling, and Charles Auffray. Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.  
Npj Systems Biology and Applications, 2018, 4:21.
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Nastasja C. Hauck, Josiane Kirpach, Christina Kiefer, Sophie Farinelle, Sophie Maucourant, Stephen A. Morris, William Rosenberg, Feng He, Claude P. Muller, I-Na Lu. Applying Unique Molecular Identifiers in Next Generation Sequencing Reveals a Constrained Viral Quasispecies Evolution under Cross-Reactive Antibody Pressure Targeting Long Alpha Helix of Hemagglutinin.
Viruses, 2018, 10(4). pii: E148. doi: 10.3390/v10040148.
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Davide G Franchina, Feng He, Dirk Brenner. Survival of the fittest: Cancer challenges T cell metabolism.  
Cancer Letter2017,  pii: S0304-3835(17)30649-3. doi: 10.1016/j.canlet.2017.10.014
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Pavel Kolkhir, Elena Borzova, Clive Grattan, Riccardo  Asero, Dmitry Pogorelov, Marcus Maurer. Autoimmune comorbidity in chronic spontaneous urticaria: A systematic review. 
Autoimmunity Reviews2017, 16(12):1196-1208. 
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Feng He#, Markus Ollert. Network-guided key gene discovery for a given cellular process. 
Adv Biochem Eng Biotechnol2016 Oct 26, doi: 10.1007/10_2016_39
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Aidos Baumuratov, Paul Antony, Marek Ostaszewski, Feng He, Luis Salamanca, Laurent Antunes, Jos Weber, Laura Longhino, Pascal Derkinderen, Werner Koopman, Nico Diederich. Enteric neurons from Parkinson’s disease patients display ex vivo aberrations in mitochondrial structure.  
Scientific Reports2016, 6, 33117.
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Feng He#, Wei Wang, Ping Zheng, Padhmanand Sudhakar, Jibin Sun et al.. Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions. 
Integrative Biology (Camb)2014, 6: 215-223.
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Padhmanand Sudhakar, Michael Reck, Wei Wang, Feng He, Irene Wagner-Döbler et al.. Construction and verification of the transcriptional regulatory response network of the biofilm forming caries pathogen Streptococcus mutans upon treatment with the biofilm inhibitor carolacton. 
BMC Genomics, 2014, 15:362. 
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Feng He, Ulrike Sauermann, Christiane Beer, Silke Winkelmann, Zheng Yu et al.. Identification of molecular sub-networks associated with cell survival in a chronically SIVmac-infected human CD4+ T cell line. 
Virology Journal, 2014, 11:152.
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Feng He and Rudi Balling, The role of regulatory T cells in neurodegenerative diseases. 
WIREs Systems Biology and Medicine, 2013, 5:153-180.
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Feng He, Hairong Chen, Michael Probst-Kepper, Robert Geffers, Serge Eifes, Antonio del Sol, Klaus Schughart, An-Ping Zeng & Rudi Balling. PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells. 
Molecular Systems Biology, 2012, 8:624-643. chosen as Featured Article in the journal
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Feng He, Rudi Balling, An-Ping Zeng. Reverse engineering and verification of gene networks: Principles, assumptions and limitations of present methods and future perspectives. 
Journal of Biotechnology, 2009, 144:190-203. 
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Feng He, Jan Buer, An-Ping Zeng and Rudi Balling. Dynamic cumulative activity of transcription factors as a mechanism of quantitative gene regulation. 
Genome Biology, 2007, 8(9):181-198.
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Bin Ma, Timo Zimmermann, Manfred Rohde, Simon Winkelbach, Feng He, Werner Lindenmaier, Kurt EJ Dittmar. Use of Autostitch for automatic stitching of microscope images.
Micron 2007, 38 (5): 492-499
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Bin Ma*, Feng He*, Jadwiga Jablonska, Simon Winkelbach, Werner Lindenmaier, An‐Ping Zeng, Kurt EJ Dittmar. Six‐color segmentation of multicolor images in the infection studies of Listeria monocytogenes.
Microscopy Research and Technique, 2007, 70 (2): 171-178
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Feng He and An-Ping Zeng. In search of functional association from time-series microarray data based on the change trend and level of gene expression. 
BMC Bioinformatics, 2006, 7:69-83. 
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